Neon Genesis Evangelion won Television Award in 1996 and it's director Hideaki Anno won Individual Award same year.  In 1997 soundtrack of this anime won award for Best Music Composing. 

Revolutionary Girl Utena won Television Award in 1997.

Cowboy Bebop won Television Award in 1998.

Turn A Gundam won Television Award in 1999.

Infinite Ryvius won Television Award in 2000.

Angelic Layer won Television Award in 2001.

RahXephon won Television Award in 2002.

Mobile Suit Gundam SEED won Television Award in 2003.

Fullmetal Alchemist won Television Award in 2004.

Gankutsuou: The Count of Monte Cristo won Television Award in 2005.

The Melancholy of Haruhi Suzumiya won Television Award in 2006. It also won Theme Song Award same year, for it's song Hare Hare Yukai.

Code Geass: Lelouch of the Rebellion won Television Award in 2007.

Code Geass: Lelouch of the Rebellion R2 won Television Award in 2008.

Eden of the East won Television Award in 2009.

K-On!! won Television Award in 2010.

Mahou Shoujo Madoka Magica won Television Award in 2011.

Yuru Yuri won Television Award in 2012.

Attack on Titan won Television Award in 2013. It also won Theme Song Award same year, for its song Guren no Yumiya.

Love Live! School Idol Project won Television Award in 2014.

Shirobako won Television Award in 2015.

Ghost in the Shell won Theatrical Film Award in 1996.

Princess Mononoke won Theatrical Film Award in 1997. Director of this movie, Hayao Miyazaki, also won an Individual Award same year.

Pokemon Movie 1: The First Movie won Theatrical Film Award in 1998.

Cardcaptor Sakura: The Movie won Theatrical Film Award in 1999.

Cardcaptor Sakura: The Movie 2: The Sealed Card won Theatrical Film Award in 2000.

Spirited Away won Theatrical Film Award in 2001.

The Cat Returns won Theatrical Film Award in 2002.

Millennium Actress won Theatrical Film Award in 2003.

Ghost in the Shell 2: Innocence won Theatrical Film Award in 2004.

Mobile Suit Zeta Gundam: A New Translation -Heirs to the Stars- won Theatrical Film Award in 2005.

The Girl Who Leapt Through Time won Theatrical Film Award in 2006.

Paprika won Theatrical Film Award in 2007.

Evangelion: 1.0 You Are (Not) Alone won Theatrical Film Award in 2008.

The Disappearance of Haruhi Suzumiya won Theatrical Film Award in 2010. (WALL-E made by Pixar won in 2009.)

Macross Frontier: Sayonara no Tsubasa won Theatrical Film Award in 2011.

K-On! Movie won Theatrical Film Award in 2012.

The Garden of Words won Theatrical Film Award in 2013.

Mahou Shoujo Madoka Magica Movie 3: Hangyaku no Monogatari won Theatrical Film Award in 2014.

Ghost in the Shell: The New Movie won Theatrical Film Award in 2015.

Key the Metal Idol won Packaged Work Award in 1996.

Gundam Wing: Endless Waltz won Packaged Work Award in 1997.

Sakura Wars OVA 1 won Packaged Work Award in 1998. Sakura Taisen 2 ~Kimi, Shinitamou koto Nakare~ is a video game that also won this award in 1998.

Blue Submarine No. 6 won Packaged Work Award in 1999.

Voices of a Distant Star won Packaged Work Award in 2002. Video game Shenmue won in 2000 and video game Gran Turismo 3: A-Spec won in 2001.

Yukikaze won Packaged Work Award in 2003.

Haré+Guu FINAL won Packaged Work Award in 2004.

Gunbuster 2 won Packaged Work Award in 2005.

Wings of Rean won Packaged Work Award in 2006.

Ghost in the Shell: Stand Alone Complex - Solid State Society won Packaged Work Award in 2007.

Melancholy of Haruhi-chan Suzumiya won Network Award in 2009.