The following anime were aired in 1999
| Adventures of Mini-Goddess, The | TV | 1998 | |
| A Girl in a Lower Grade | TV | 1999 | |
| Alexander Senki | OVA | 1999 | |
| Amazing Nurse Nanako | OVA | 1999 | |
| Angel Links | TV | 1999 | |
| Aoi and Mutsuki: A Pair of Queens | TV | 1999 | |
| Arc the Lad | TV | 1999 | |
| Ayatsuri Sakon | TV | 1999 | |
| Betterman | TV | 1999 | |
| Big O, The | TV | 1999 | |
| Black Heaven | OVA | 1999 | |
| Blue Gender | TV | 1999 | |
| Bothersome Witch Doremi | TV | 1999 | |
| Bubblegum Crisis Tokyo 2040 | TV | 1998 | |
| Card Captor Sakura | TV | 1998 | |
| Cardcaptor Sakura: The Movie | Movie | 1999 | |
| Case Closed | TV | 1996 | |
| Chikyuu Bouei Kigyou Dai-Guard | TV | 1999 | |
| Chivas 1-2-3 | OVA | 1999 | |
| City Hunter: Death of the Vicious Criminal Ryo Saeba | Special | 1999 | |
| Clover | Music Video | 1999 | |
| Colorful | TV | 1999 | |
| Cowboy Bebop | TV | 1998 | |
| Crayon Shin-chan | TV | 1992 | |
| Crest of the Stars | TV | 1999 | |
| Cyber Formula SIN | OVA | 1998 | |
| D4 Princess | TV | 1999 | |
| Dai-Guard | TV | 1999 | |
| Detective Conan | TV | 1996 |